Package: rnaCrosslinkOO
Type: Package
Title: Analysis of RNA Crosslinking Data
Version: 0.1.4
Authors@R: c(person("Jonathan", "Price", 
                    email="jlp76@cam.ac.uk", 
                    role=c("aut","cre"),
                    comment = c(ORCID = "0000-0001-6554-5667")),
             person("Andrew", 
                    "Lim", 
                     email="ajhl3@cam.ac.uk",
                     role=c("ctb")))
Maintainer: Jonathan Price <jlp76@cam.ac.uk>
Description: Analysis of RNA crosslinking data for RNA structure
        prediction. The package is suitable for the analysis of RNA
        structure cross-linking data and chemical probing data.
License: GPL-3
Encoding: UTF-8
BugReports: https://github.com/JLP-BioInf/rnaCrosslinkOO/issues
Depends: seqinr, GenomicRanges, stats
Imports: ggplot2, reshape2, MASS, mixtools, utils, S4Vectors,
        patchwork, doParallel, igraph, R4RNA, RColorBrewer, IRanges,
        foreach,grDevices, heatmap3, TopDom, tidyverse, RRNA, ggrepel,
        methods, parallel, ClassDiscovery
RoxygenNote: 7.3.1
Collate: 'rnaCrosslinkOO.R' 'rnaCrosslinkDataSet.R'
        'clusterrnaCrosslink.R'
        'clusterrnaCrosslinkMethodsAndHelpers.R'
        'commonHelpersAndMethods.R' 'commonStatsAndPlots.R'
        'foldrnaCrosslink.R' 'foldrnaCrosslinkMethodsAndHelpers.R'
        'genericMethods.R' 'rnaCrosslinkDataSetMethodsAndHelpers.R'
        'rnaCrosslinkOO-package.R' 'rnaCrosslinkQC.R'
Suggests: knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2026-10-19 08:14:39 UTC; root
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev libglpk-dev make libharfbuzz-dev libicu-dev
        libjpeg-dev libpng-dev libtiff-dev libuv1-dev libwebp-dev
        libxml2-dev libssl-dev libx11-dev zlib1g-dev
Repository: https://jlp-bioinf.r-universe.dev
Date/Publication: 2026-05-14 14:37:25 UTC
RemoteUrl: https://github.com/jlp-bioinf/rnacrosslinkoo
RemoteRef: HEAD
RemoteSha: 1cfe4b61b494767069802504dd049f8d9093f724
Author: Jonathan Price [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6554-5667>),
  Andrew Lim [ctb]